Golden pepperoni bagel bites on parchment paper, fresh from the oven.

Homemade Bagel Bites (With Air Fryer & Oven Instructions)

Bagel Bites Recipe: These cheesy, crispy, bite-sized snacks are the ultimate crowd-pleaser—and they’re endlessly customizable. If you’re looking for an easy, flavorful snack or appetizer, this homemade bagel bites recipe delivers big time. Made from scratch with just a few simple ingredients, these stuffed bagel bites are far more delicious than anything you’d pull from the freezer aisle.

Whether you prefer baking or using an air fryer for bagel bites, this step-by-step guide has you covered. As a result, You’ll end up with perfectly golden edges, gooey melted cheese, and that classic pizza-bagel taste in every bite. Plus, they’re not just fun to make—they’re also great for quick snacks, game day treats, or easy weeknight meals. Let’s jump in!

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Bagel Bites

Homemade Bagel Bites – soft mini bagels topped with sauce, cheese, and your favorite toppings. Baked or air-fried to perfection for a fun, cheesy snack!

  • Author: Chef Rina
  • Prep Time: 15 minutes
  • Cook Time: 30 minutes
  • Total Time: 45 minutes
  • Yield: 24 bagel bites
  • Category: Snack

Ingredients

1 ¾ cups self-rising flour. check notes on how to make your own self-rising flour

1 cup plain Greek yogurt

1 tbsp melted butter/oil, or egg wash for shinier crust

½ cup pizza sauce

¾ cup mozzarella cheese

¼ cup diced pepperoni, or toppings of choice

Four bowls with flour, yogurt, sauce, and cheese.

Instructions

Bagel Bites Instructions (Oven Method)

  1. Preheat the oven to 350°F (180°C).

  2. In a large bowl, mix the self-rising flour with Greek yogurt until combined. Mix with a fork until crumbly.

  3. Use your hands to knead the mixture for 2–3 minutes until it forms a smooth dough ball. (It will feel dry at first—just keep kneading.)

  4. Dust your work surface with a little flour, then divide the dough evenly into 12 portions.

  5. Roll each piece into a thin rope (about 5 inches long), then bring the ends together to form a bagel shape. Pinch the ends to seal.

  6. Place on a parchment-lined baking sheet and brush with butter, oil, or egg wash.

  7. Bake at 350°F for 20–24 minutes until lightly golden. Don’t worry if they seem pale—they’ll darken after cooling and a second bake.

Four-step process showing oven preheating, mixing dough, shaping mini bagels, and arranging them on a baking sheet.

Assemble the Bagel Bites:

  1. Let the bagels cool and increase oven temperature to 425°F.

  2. Once cool, slice each bagel in half horizontally and arrange cut-side up on a lined baking sheet.

  3. Spread 1 teaspoon of pizza sauce over each half.

  4. Top with mozzarella and desired toppings (try mini bagel bites sausage slices).

  5. Bake at 425°F for 8–10 minutes, or until cheese is bubbly and melted.

  6. Let cool before serving.

Air Fryer Bagel Bites Instructions

Prefer bagel bites in the air fryer? Follow steps 1–5 above to prep your mini bagels. Then:

  1. Preheat air fryer to 350°F.

  2. Place mini bagels in the basket (don’t overcrowd).

  3. Air fry bagel bites for 8–10 minutes until golden and puffed.

  4. Remove, slice, top with sauce, cheese, and toppings.

  5. Return to air fryer at 375°F for 4–5 minutes until the cheese melts.

Whether you’re trying bagel bites air fryer style or sticking to the oven, both versions are easy, fast, and crowd-pleasing!

Mini bagels in air fryer basket, topped with sauce, cheese, and pepperoni, shown before and after air frying.

Bagel Bites Nutrition Facts

Note: Values vary based on toppings and serving size.

  • Calories per bite: ~90–120

  • Protein: ~5g

  • Fat: ~4g

  • Carbs: ~12g

Looking for a lighter option? Use low-fat cheese and veggie toppings for lower bagel bites calories.

Serve With:

These pair great with bagel bites chips, marinara dipping sauce, or a crisp green salad. Ideal for parties, snacks, or even lunchboxes!

Plate with pepperoni bagel bites, potato chips, marinara sauce, and fresh greens.

Notes

  • Don’t be discouraged if the dough feels dry at first—it will come together as you knead it. Using your hands is key here. Depending on the brand and thickness of your yogurt, you might need to adjust slightly by adding a touch more flour or yogurt to achieve the right consistency.

  • Keep an eye on the mini bagels while baking. They may appear pale even when fully cooked, so test by slicing one in half. Once baked through, remove them promptly—they’ll darken slightly as they cool and will gain more color during the second bake with toppings.

  • Choose a high-quality pizza sauce—since it’s the flavor foundation, it makes a big difference in the final taste.

  • No self-rising flour? No worries! You can easily make your own: Combine 2 cups of all-purpose flour with 3 teaspoons of baking powder and ½ teaspoon of salt. Mix well, then measure out 1¾ cups for this recipe.

  • To make this recipe gluten-free, substitute with a 1:1 gluten-free all-purpose flour blend.

 

Nutrition

  • Serving Size: 24 bagel bites
  • Calories: 60kcal
  • Sugar: 1g
  • Sodium: 72mg
  • Fat: 2g
  • Saturated Fat: 1g
  • Unsaturated Fat: 1.2g
  • Trans Fat: 0.04g
  • Carbohydrates: 7g
  • Fiber: 0.3g
  • Protein: 3g
  • Cholesterol: 6mg

Keywords: Bagel Bites, mozzarella cheese, barley malt syrup, dairy free yogurt, self rising flour, almond flour, cream cheese, brown sugar, mini bagels, pizza sauce, bread flour, baking soda, pepperoni, egg white, sausage, cheese, honey

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Plate of pepperoni bagel bites arranged neatly on a light surface.

Bagel Bites Recipe FAQ – Cooking Times, Methods, and More

How long to cook Bagel Bites in air fryer?

For perfectly crispy air fryer Bagel Bites, cook them at 375°F for 5–6 minutes. If they’re frozen, add an extra minute or two. Always check that the cheese is fully melted and the edges are crisp.

How to cook Bagel Bites in air fryer?

Preheat your air fryer to 375°F. Place the mini bagels in a single layer (no overcrowding). Cook for 5–7 minutes, or until the cheese is melted and bubbling.

What temperature and how long do I cook Bagel Bites?

In the oven, bake frozen Bagel Bites at 425°F for 12–14 minutes. In the air fryer, 375°F for 5–7 minutes works best.

How long to cook Bagel Bites in microwave?

For the microwave, cook 4 Bagel Bites for about 55 seconds, or 8 Bagel Bites for 1 minute and 45 seconds. Use a microwave-safe plate.

How to cook Bagel Bites in microwave?

Place the frozen Bagel Bites on a microwave-safe plate and cook according to the quantity:
– 4 bites = 55 seconds
– 8 bites = 1 minute 45 seconds
Let them stand for 1 minute before eating.

Is it safe to microwave a bagel?

Yes, it’s safe to microwave a bagel, but for best texture, avoid overcooking. Warm for 10–15 seconds if fresh, or up to 30 seconds if frozen.

How long to cook Bagel Bites in oven?

Bake at 425°F for 12–14 minutes, or until the cheese is melted and the crust is lightly golden.

How to cook Bagel Bites in oven?

Preheat oven to 425°F. Arrange frozen Bagel Bites on a baking sheet and cook for 12–14 minutes. Let cool slightly before serving.

How long do I cook frozen Bagel Bites?

– In the oven: 425°F for 14 minutes.
– In the air fryer: 375°F for 6–8 minutes.
– In the microwave: 1–2 minutes, depending on quantity.

How to cook frozen bagel in air fryer?

Place frozen bagels or Bagel Bites in the air fryer at 375°F and cook for 6–8 minutes, flipping halfway if needed.

Are Bagel Bites better in the microwave or air fryer?

The air fryer gives the best crispiness and texture, while the microwave is quicker but may result in a softer crust.

Are Bagel Bites better in the oven or air fryer?

Both work well, but the air fryer gives a faster cook time and crisper result, while the oven gives a classic, evenly-baked bite.

Are Bagel Bites good?

es! With crispy crust, melted cheese, and customizable toppings, Bagel Bites are a fun, nostalgic snack or easy appetizer.

When did Bagel Bites come out?

Bagel Bites were first introduced in the late 1980s, gaining popularity in the ’90s as a frozen snack staple.

What are the different flavors of Bagel Bites?

Common varieties include:
– Pepperoni
– Cheese
Sausage & Cheese
– Supreme (with veggies)
Some stores also carry breakfast bagel bites and limited editions.

How many Bagel Bites should I eat?

A typical serving is 4 Bagel Bites (about 190–200 calories). Adjust based on hunger or dietary needs.

How many mini bagels equal one bagel?

Generally, 2–3 mini bagels equal one regular-sized bagel in volume and calories, depending on ingredients.

How to make Bagel Bites?

Combine self rising flour and Greek yogurt to make dough, shape into mini bagels, bake, then top with pizza sauce, mozzarella cheese, and your favorite toppings. Bake again until melty and golden.

Craving more quick bites? Try these ultra-tender Garlic Butter Chicken Bites—ready in just 15 minutes!

If you love bold flavors, you’ll want to check out these Grilled Chicken Bites with Creamy Garlic Sauce.

For a breakfast spin on bite-sized snacks, these Homemade McGriddle Bites are sweet, savory, and meal-prep friendly.

Looking for something with a spicy twist? These Spicy Salmon Crispy Rice Bites deliver restaurant-quality crunch and flavor.

And for a veggie-packed snack, don’t miss these Cheesy Corn Fritters—crispy, cheesy, and totally crowd-pleasing.

Final Thoughts

Making your own homemade Bagel Bites is easier than you might think—and so much more satisfying than the store-bought kind. With a simple dough made from self-rising flour and Greek yogurt, plus your favorite toppings like cheese, pizza sauce, or sausage, you can create a snack that’s totally customizable and family-approved.

Whether you bake them in the oven or toss them in the air fryer, you’ll end up with crispy, melty bites of pizza perfection. Best of all, you can tweak the recipe to be gluten-free, lower in calories, or loaded with protein depending on your needs.

So next time you’re craving a savory snack, skip the freezer aisle—these Bagel Bites are better, fresher, and just plain fun to make. Happy snacking!



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